Horňák K, Zeder M, Blom JF, Posch T, Pernthaler J.
Suboptimal light conditions negatively affect the heterotrophy of Planktothrix rubescens but are beneficial for accompanying Limnohabitans spp.
Environ Microbiol. 2011 Nov 9. doi:10.1111/j.1462-2920.2011.02635.x. [Epub ahead of print] PubMed PMID: 22070761.

Zeder M, Kohler E, Zeder L, Pernthaler J.
A novel algorithm for the determination of bacterial cell volumes that is unbiased by cell morphology.
Microscopy and Microanalysis, Accepted 12. May 2011.

Van den Wyngaert S, Salcher MM, Pernthaler J, Zeder M, Posch T.
Quantitative dominance of seasonally persistent filamentous cyanobacteria (Planktothrix rubescens) in the microbial assemblages of a temperate lake.
Limnol Oceanogr. 2011 Jan;56(1):97-109.

Zeder M, Ellrott A, Amann R.
Automated sample area definition for high-throughput microscopy.
Cytometry A. 2011 Apr;79(4):306-10.

Hörtnagl P, Pérez MT, Zeder M, Sommaruga R.
The bacterial community composition of the surface microlayer in a high mountain lake.
FEMS Microbiol Ecol. 2010 Sep;73(3):458-67.

Gademann K, Portmann C, Blom JF, Zeder M, Jüttner F.
Multiple toxin production in the cyanobacterium microcystis: isolation of the toxic protease inhibitor cyanopeptolin 1020.
J Nat Prod. 2010 May 28;73(5):980-4.

Zeder M, Van den Wyngaert S, Köster O, Felder KM, Pernthaler J.
Automated quantification and sizing of unbranched filamentous cyanobacteria by model based object oriented image analysis.
Appl Environ Microbiol. 2010 Mar;76(5):1615-22.

Zeder M, Kohler E, Pernthaler J.
Automated quality assessment of autonomously acquired microscopic images of fluorescently stained bacteria.
Cytometry A. 2010 Jan;77(1):76-85.

Zeder M, Pernthaler J.
Multi-spot live-image autofocusing for high-throughput microscopy of fluorescently stained bacteria.
Cytometry A. 2009 Sep;75(9):781-8.

Zeder M, Peter S, Shabarova T, Pernthaler J.
A small population of planktonic Flavobacteria with disproportionally high growth during the springphytoplankton bloom in a prealpine lake.
Environ Microbiol. 2009 Oct;11(10):2676-86.

Felder KM, Hoelzle K, Wittenbrink MM, Zeder M, Ehricht R, Hoelzle LE.
A DNA microarray facilitates the diagnosis of Bacillus anthracis in environmental samples.
Lett Appl Microbiol. 2009 Sep;49(3):324-31

Alonso C, Zeder M, Piccini C, Conde D, Pernthaler J.
Ecophysiological differences of betaproteobacterial populations in two hydrochemically distinct compartments of a subtropical lagoon.
Environ Microbiol. 2009 Apr;11(4):867-76.

Salcher MM, Pernthaler J, Zeder M, Psenner R, Posch T.
Spatio-temporal niche separation of planktonic Betaproteobacteria in an oligo-mesotrophic lake.
Environ Microbiol. 2008 Aug;10(8):2074-86.

Connor EC, Rott AS, Zeder M, Jüttner F, Dorn S.
13C-labelling patterns of green leaf volatiles indicating different dynamics of precursors in Brassica leaves.
Phytochemistry. 2008 Apr;69(6):1304-12